INCOGNITO™ iPSCMax™ Ψ-mRNA Reprogramming Mix

Q: What type of cells can the INCOGNITO™ iPSCMax™ Ψ-mRNA Reprogramming Mix be used on?

A: Currently, we can only recommend using this mix with fibroblasts.

Q: Do I have to use Lipofectamine™ MessengerMax™ as the transfection reagent?

A: Our protocol is optimized using Lipofectamine™ MessengerMax™, and we strongly recommend using it without substitution. Substituting another reagent may lead to loss of reprogramming efficiency.

Q: Why is it important to use mRNAs with reduced immunogenicity in reprogramming?

A: Synthetic mRNAs produced without chemically modified nucleotides along with the double-stranded RNA (dsRNA) byproducts generated during in vitro transcription (IVT) can activate the innate immune response in cells. This activation may lead to a cascade of cellular events, including the release of inflammatory cytokines, suppression of protein synthesis, cell cycle arrest, and apoptosis. Based on our observations, a single transfection of synthetic mRNA typically does not compromise the overall viability of a cell culture. However, repeated transfections—such as those required during cellular reprogramming—can significantly amplify the innate immune response, resulting in extensive cell death and impairing the efficiency of reprogramming and the formation of induced pluripotent stem cell (iPSC) colonies.

The mRNAs in the INCOGNITO™ iPSCMax™ Ψ-mRNA Reprogramming Mix contain the modified nucleoside pseudouridine substituted for each uridine in the mRNA sequences and have been treated with CELLSCRIPT™’s Min-Immune™ Gold dsRNA Removal Kit, producing an mRNA mix with ultra-low immunogenicity that enables high reprogramming efficiencies.

Q: Do I need an incubator that is capable of producing hypoxic conditions to perform fibroblast mRNA reprogramming?

A: No. Our reprogramming procedure using the INCOGNITO™ iPSCMax™ Ψ-mRNA Reprogramming Mix is performed using a standard cell culture incubator set at 37°C and 5% CO2.

Q: What type of fibroblasts should I start with?

A: For reliable reprogramming, use adult dermal or neonatal fibroblasts. Aim for low-passage, actively dividing cultures, as these respond far better to mRNA transfection and are easier to reprogram.

Q: Does fibroblast passage number really matter?

A: Yes. Early-passage fibroblasts reprogram more efficiently. With higher passage, fibroblasts may enter senescence, making them more sensitive to the stresses of mRNA transfection and harder to reprogram.

Q: Can I still reprogram senescent fibroblasts?

A: It’s possible but expect lower efficiency. Senescent fibroblasts are more sensitive to stresses induced by mRNA transfection and are harder to reprogram. If you must use them, you may need to extend the regimen (e.g., 7–10 transfections instead of 5) and/or lower the mRNA dose delivered with each transfection to mitigate the death that may occur due to stress induced by the mRNA transfections.

Q: How do I recognize senescent fibroblasts in my culture?

A: Look for cells that are larger, flatter, and slower to divide compared to compact, fast-dividing fibroblasts. Morphology and the rate at which a culture needs splitting (e.g. every 3-4 days versus every 5-7 days) are good first clues. In research settings, senescence-associated markers (e.g., SA-β-gal staining) can provide confirmation.

Q: How should I optimize mRNA transfection for my fibroblasts?

A: Start with the recommended baseline (e.g., 500 ng mRNA per transfection per well in a 6-well plate with the recommended transfection reagent volume and plated cell density). If efficiency is low, adjust systematically:

  • Modify mRNA or transfection reagent amounts
  • Alter cell density at plating
  • Extend the number of transfections (up to 10 if needed)
Q: Can I adjust the mRNA or reagent amounts if my cell line is sensitive?

A: Absolutely. While 500 ng mRNA per well is standard, you can fine-tune mRNA and reagent volumes depending on your fibroblast line’s viability and transfection sensitivity. However, we do NOT recommend going below 300 ng of the mRNA mix per transfection per well at the recommended cell density of 5×105 cells per well.

Q: When will iPSC colonies appear, and how should I handle them?

A: Expect colonies to emerge 3-5 days after the final transfection. Once colonies are large enough, manually pick them onto plates coated with an appropriate substrate (e.g. Laminin-521, Vitronectin, or Matrigel®) in iPSC medium supplemented with 10 µM Y-27632 ROCK inhibitor (only for the first 24 hours after transfer).

Q: Do I need ROCK inhibitor beyond the picking step?

A: No. ROCK inhibitor is used only during the first 24 hours post-picking to improve survival. After that, maintain colonies in standard iPSC medium without the inhibitor.

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